Please use this identifier to cite or link to this item: http://hdl.handle.net/20.500.12323/5687
Title: Mining and Survey of Simple Sequence Repeats in Expressed Sequence Tags of Tomato Species
Authors: Sharifova, Saida
Mehdiyeva, Sabina
Shahmuradov, Ilham
Keywords: SSRs
tomato
wild
repeats
unigene
ESTs
Issue Date: 2016
Citation: Albanian Journal of Agricultural Sciences (AJAS)
Series/Report no.: Vol. 15;№ 2
Abstract: Expressed Sequence Tags (ESTs) of three tomato species were computationally mined for simple sequence repeats (SSRs). A total of 4,490, 291 and 1,270 simple sequence repeats identified in analyzed non-redundant ESTs of Solanum lycoperisicum, Solanum pennellii and Solanum habrochaites, respectively. In S. lycopersucum, 416 sequences contained more than one SSR and 264 motifs were present in compound formation. 24 and 137 EST sequences contained more than one SSR, and 16 and 93 motifs were found in compound formation in S. pennellii and S. habrochaites, respectively. The frequency of repeats within all retrieved S. lycopersicum EST sequences were 7.6%, whereas this number was corresponded to 6.5% in S. pennellii and 9% in S. habrochaites. An average density was one SSR per 9 kb in S. lycopersicum, per 7.9 kb in S. pennellii and per 9.4 kb in S. habrochaites. AT/AT, AG/CT and AAG/CTT motifs, considering sequence complementary, detected more frequently among all types of identified repeats.
URI: http://hdl.handle.net/20.500.12323/5687
ISSN: 2218-2020
Appears in Collections:Publications

Files in This Item:
File Description SizeFormat 
Mining and Survey of Simple Sequence Repeats in Expressed Sequence Tags of Tomato Species.pdf147.86 kBAdobe PDFView/Open


Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.